The exit status of the task that caused the workflow execution to fail was: null.
The full error message was:
Error executing process > 'MD5sums (6188)'
Caused by:
Process `MD5sums (6188)` terminated for an unknown reason -- Likely it has been terminated by the external system
Command executed:
set -eou pipefail
ls -1 $PWD
echo "Creating MD5sum checks"
hashes=$(echo TARGET-20-UPN2747-04A-01R_RBS_concat_chastity_passed_r2.fastq.gz)
hashes=${hashes}.md5
md5sum TARGET-20-UPN2747-04A-01R_RBS_concat_chastity_passed_r2.fastq.gz > $hashes
echo ----------------------------------------
ls -1 $PWD
Command exit status:
-
Command output:
(empty)
Work dir:
s3://fh-pi-meshinchi-s-nextflow-scratch/42/43f9f1b802900592cf66ad46724862
Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`
nextflow run -c /home/jlsmith3/nextflow.config create_MD5.nf --sample_sheet sample_sheets/TARGET_AML_Fastqs_MD5_Sample_Sheet.txt --output_folder 's3://fh-pi-meshinchi-s-eco-public/TARGET_AML/RNAseq_Illumina_Data/Fastq' -with-report Create_MD5sums_report.html -cache TRUE -resumef844af15b59b6e145fc6ba60a71bf1519d18987c-7583-4533-95dc-4969dd673b38These plots give an overview of the distribution of resource usage for each process.
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