Nextflow workflow report

[reverent_wiles] (resumed run)

Workflow execution completed unsuccessfully!

The exit status of the task that caused the workflow execution to fail was: null.

The full error message was:

Error executing process > 'MD5sums (6188)'

Caused by:
  Process `MD5sums (6188)` terminated for an unknown reason -- Likely it has been terminated by the external system

Command executed:

  set -eou pipefail
  ls -1 $PWD
  
  echo "Creating MD5sum checks"
  hashes=$(echo TARGET-20-UPN2747-04A-01R_RBS_concat_chastity_passed_r2.fastq.gz)
  hashes=${hashes}.md5
  md5sum TARGET-20-UPN2747-04A-01R_RBS_concat_chastity_passed_r2.fastq.gz > $hashes
  
  
  echo ----------------------------------------
  ls -1 $PWD

Command exit status:
  -

Command output:
  (empty)

Work dir:
  s3://fh-pi-meshinchi-s-nextflow-scratch/42/43f9f1b802900592cf66ad46724862

Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`
Run times
06-Apr-2021 11:57:04 - 06-Apr-2021 15:33:36 (duration: 3h 36m 32s)
  4903 succeeded  
  0 cached  
  0 ignored  
  324 failed  
Nextflow command
nextflow run -c /home/jlsmith3/nextflow.config create_MD5.nf --sample_sheet sample_sheets/TARGET_AML_Fastqs_MD5_Sample_Sheet.txt --output_folder 's3://fh-pi-meshinchi-s-eco-public/TARGET_AML/RNAseq_Illumina_Data/Fastq' -with-report Create_MD5sums_report.html -cache TRUE -resume
CPU-Hours
92.3 (56.8% failed)
Launch directory
/home/jlsmith3/scripts/STAR-fusion-NF
Work directory
s3://fh-pi-meshinchi-s-nextflow-scratch/
Project directory
/home/jlsmith3/scripts/STAR-fusion-NF
Script name
create_MD5.nf
Script ID
f844af15b59b6e145fc6ba60a71bf151
Workflow session
9d18987c-7583-4533-95dc-4969dd673b38
Workflow profile
standard
Nextflow version
version 20.04.1, build 5335 (03-05-2020 19:37 UTC)

Resource Usage

These plots give an overview of the distribution of resource usage for each process.

CPU

Memory

Job Duration

I/O

Tasks

This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.

(tasks table omitted because the dataset is too big)